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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7864076_7864802_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7864076 - 7864802
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TTCTTTTAAACA
Flanking Amino Acid:
SIDIVLSITKHLRQADVAGK
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
64.1
0.44
1.6
73.92
38.7

Associated Gene:

Gene:
IREB2
Ensembl Gene ID:
ENSAPLG00000016388
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026271
7853160 - 7875367
22208
ENSAPLT00000017108
7852631 - 7875367
22737