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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7868298_7869118_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7868298 - 7869118
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
AAAACATAAACT
Flanking Amino Acid:
NCNPSVMLAAGLLAKKAVEA
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
48.9
-0
1.9
67.09
42.6

Associated Gene:

Gene:
IREB2
Ensembl Gene ID:
ENSAPLG00000016388
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026271
7853160 - 7875367
22208
ENSAPLT00000017108
7852631 - 7875367
22737