Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7871174_7871434_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7871174 - 7871434

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TACTTTTATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTGGTTACTT

Flanking Amino Acid:

MFKELKEKMEKGNKRWNSLE

Intron Amino Acid Position:

695

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.6

0.8

84.6

33.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

77.2

0.61

0.9

73.9

35.5

Minor 5ss

37.1

-1.5

48.5

47.2

Minor BPS

48.4

-0

2.6

79.08

43.9

Associated Gene:

Gene:

IREB2

Ensembl Gene ID:

ENSAPLG00000016388

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026271

7853160 - 7875367

22208

ENSAPLT00000017108

7852631 - 7875367

22737