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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7881730_7882369_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7881730 - 7882369
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATGTATTGAAGT
Flanking Amino Acid:
DGNIMSLEPRGSEPDNKKYM
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
66.6
0.37
1
65.6
41
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
48.5
-0
1.9
68.03
42.8

Associated Gene:

Gene:
HYKK
Ensembl Gene ID:
ENSAPLG00000016369
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017082
7881377 - 7886829
5453