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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7886934_7887025_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7886934 - 7887025
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CGGGCGGTGACG
Flanking Amino Acid:
MSRRYDSRTTI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
85.8
0.8
0.8
80.9
31.1
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
36.6
-1.2
2.5
38.2
45.3

Associated Gene:

Gene:
PSMA4
Ensembl Gene ID:
ENSAPLG00000016347
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017063
7886833 - 7891726
4894