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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7887069_7887851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7887069 - 7887851
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGTT
5'SS Class:
major
3'SS Sequence:
AATTGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATAATTTAAAT
Flanking Amino Acid:
DSRTTIFSPEGRLYQVEYAM
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
69.2
41.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
70.8
0.47
0.9
62.5
43.4
Minor 5ss
41.3
-1
3.7
64.7
46.6
Minor BPS
59.6
0.38
1.6
76.65
39.1

Associated Gene:

Gene:
PSMA4
Ensembl Gene ID:
ENSAPLG00000016347
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017063
7886833 - 7891726
4894