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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7888015_7889364_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7888015 - 7889364
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
GCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATCCAATTCATT
Flanking Amino Acid:
FFSEKIYKLNEDMACSVAGI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.7
39.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.9
0.74
0.8
76.8
31.8
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
43.5
-0.4
2.1
62
41.9

Associated Gene:

Gene:
PSMA4
Ensembl Gene ID:
ENSAPLG00000016347
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017063
7886833 - 7891726
4894