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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7889751_7890613_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7889751 - 7890613
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTTTCCAACA
Flanking Amino Acid:
DIKQAYTQFGGKRPFGVSLL
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
50.4
0.01
1.9
67.52
39.2

Associated Gene:

Gene:
PSMA4
Ensembl Gene ID:
ENSAPLG00000016347
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017063
7886833 - 7891726
4894