About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7890745_7890954_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7890745 - 7890954
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
GTGGAATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACCATTTTAATT
Flanking Amino Acid:
KATCIGNNSAAAVSMLKQDY
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
62.9
0.29
1
54.5
44.7
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
58.5
0.35
1.3
65.7
40

Associated Gene:

Gene:
PSMA4
Ensembl Gene ID:
ENSAPLG00000016347
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017063
7886833 - 7891726
4894