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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7898263_7906315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7898263 - 7906315
Intron Length:
8053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCGC
5'SS Class:
major
3'SS Sequence:
TTTTGTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCAATGTTAATA
Flanking Amino Acid:
AGPAGRAPYAGISEPSFIAK
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
59.1
45.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.2
0.68
0.9
76.5
37.7
Minor 5ss
31.6
-2.1
3.3
42.7
44.3
Minor BPS
49
-0
2
60
40.5

Associated Gene:

Gene:
CHRNA5
Ensembl Gene ID:
ENSAPLG00000016223
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016933
7898145 - 7914009
15865