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Intron Name: Anas_platyrhynchos_platyrhynchos_11_7906468_7907320_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7906468 - 7907320

Intron Length:

853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTAATTTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTCATAAAT

Flanking Amino Acid:

GLAISQLVDVDEKNQLMTTN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

85.3

31.1

Major BPS

100

1.24

0.5

100

Major PPT

81.4

0.71

0.8

76.8

37.1

Minor 5ss

47.9

-0.2

2.5

65.4

40.1

Minor BPS

0.71

1.7

90.16

33.1

Associated Gene:

Gene:

CHRNA5

Ensembl Gene ID:

ENSAPLG00000016223

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016933

7898145 - 7914009

15865

ENSAPLT00000032759

7905971 - 7914009

8039