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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7908865_7909852_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7908865 - 7909852
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TCCATCATAAAT
Flanking Amino Acid:
IWIPDIVLYDNADGRFEGTS
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
86.7
0.82
0.7
84.6
29.5
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
49.2
0.02
1.8
66.38
44

Associated Gene:

Gene:
CHRNA5
Ensembl Gene ID:
ENSAPLG00000016223
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032759
7905971 - 7914009
8039
ENSAPLT00000016933
7898145 - 7914009
15865