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Intron Name: Anas_platyrhynchos_platyrhynchos_11_7910685_7912725_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7910685 - 7912725

Intron Length:

2041

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTATA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

CAGCTCTTATAT

Flanking Amino Acid:

HVMKENEVREVVEDWKFIAQ

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

83.2

30.8

Major BPS

79.1

0.72

69.3

38.4

Major PPT

85.8

0.8

0.7

84.6

30.3

Minor 5ss

32.5

-2

3.1

41.3

45.3

Minor BPS

47.5

-0.1

1.7

59.35

43.7

Associated Gene:

Gene:

CHRNA5

Ensembl Gene ID:

ENSAPLG00000016223

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032759

7905971 - 7914009

8039

ENSAPLT00000016933

7898145 - 7914009

15865