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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7916508_7917952_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7916508 - 7917952
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ACTTGCTTACTT
Flanking Amino Acid:
NMKMQNEAKEIQDDWKYVAM
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83.7
0.76
0.8
81
35.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
54.6
0.22
2
73.58
44

Associated Gene:

Gene:
CHRNA3
Ensembl Gene ID:
ENSAPLG00000016121
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016846
7916322 - 7923325
7004