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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7918965_7919956_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7918965 - 7919956
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
IWKPDIVLYNNAVGDFQVDD
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
37.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
38.2
-1.3
3.3
52.2
38.6
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
CHRNA3
Ensembl Gene ID:
ENSAPLG00000016121
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016846
7916322 - 7923325
7004