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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7920067_7921213_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7920067 - 7921213
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
CTTCCATAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCCATAATT
Flanking Amino Acid:
IMETNLWLKHIWNDYKLRWN
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
64.4
0.33
0.9
64.1
35.9
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
74.9
0.86
1.5
88.85
36.2

Associated Gene:

Gene:
CHRNA3
Ensembl Gene ID:
ENSAPLG00000016121
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016846
7916322 - 7923325
7004