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Intron Name: Anas_platyrhynchos_platyrhynchos_11_7921259_7921335_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7921259 - 7921335

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCCGAC

U12 Branch Point Sequence:

TTCTGTTTTACA

Flanking Amino Acid:

EVSMSQLVKVDEVNQIMETN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.2

37.4

Major BPS

48.5

-0

1.3

38.7

Major PPT

88.4

0.86

0.7

83.2

Minor 5ss

30.7

-2.2

2.5

31.8

35.8

Minor BPS

54.2

0.13

2.1

70.65

41.9

Associated Gene:

Gene:

CHRNA3

Ensembl Gene ID:

ENSAPLG00000016121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016846

7916322 - 7923325

7004