Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7921476_7923270_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7921476 - 7923270

Intron Length:

1795

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CGTGCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TGCCCTCTCACC

Flanking Amino Acid:

LTAALCILSQGCGGSDAEHR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

72.7

0.56

30.1

Major PPT

66.1

0.36

0.9

58.2

33.1

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

45.7

-0.3

57.02

41.6

Associated Gene:

Gene:

CHRNA3

Ensembl Gene ID:

ENSAPLG00000016121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016846

7916322 - 7923325

7004