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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7932404_7935499_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7932404 - 7935499
Intron Length:
3096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CCTTGTTTCATT
Flanking Amino Acid:
IWLPDIVLYNNADGTYEVSL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
74.4
0.55
0.9
74.7
34.9
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
47.7
-0.1
2.2
66.31
45.7

Associated Gene:

Gene:
CHRNB4
Ensembl Gene ID:
ENSAPLG00000016042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016743
7929228 - 7941393
12166
ENSAPLT00000021132
7929228 - 7937240
8013