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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7936782_7941338_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7936782 - 7941338
Intron Length:
4557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTGAT
U12 Branch Point Sequence:
TGATGTTTTACA
Flanking Amino Acid:
LFVVGSYYFNGSTAADAEEK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
31.8
Major BPS
59.9
0.25
1.2
51.1
44.3
Major PPT
79
0.65
1
72.4
42.4
Minor 5ss
34.8
-1.7
3.3
49.9
46.4
Minor BPS
49.6
-0
2.1
64.53
41.6

Associated Gene:

Gene:
CHRNB4
Ensembl Gene ID:
ENSAPLG00000016042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016743
7929228 - 7941393
12166