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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7947838_7948093_F

Intron Information:

Intron Rank:
133276
Intron Class:
major
Intron Phase:
Intron Coordinates:
7947838 - 7948093
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTATATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.3
0.73
0.9
76.7
36.8
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
58
0.25
1.9
70.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026822
7946805 - 7948274
1470