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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8009741_8011940_F

Intron Information:

Intron Rank:
147004
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
8009741 - 8011940
Intron Length:
2200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
AATGCTTTGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
55.4
0.12
1.2
56.1
43
Minor 5ss
36.9
-1.5
3.1
49.9
40.3
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029178
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023506
8009425 - 8014256
4832