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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8034090_8037540_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8034090 - 8037540
Intron Length:
3451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATCAAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTATTTGTAAAT
Flanking Amino Acid:
MLDQPLPAGQHEVVYSESSS
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
48.4
-0
1.7
55.6
43.6
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
49.2
0.02
2.1
70.2
40.7

Associated Gene:

Gene:
UBE2Q2
Ensembl Gene ID:
ENSAPLG00000015808
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016525
8034060 - 8057259
23200