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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8037721_8044838_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8037721 - 8044838
Intron Length:
7118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
RKNQRQDHLNGAVSGSVQAS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
UBE2Q2
Ensembl Gene ID:
ENSAPLG00000015808
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016525
8034060 - 8057259
23200