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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8052539_8053729_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8052539 - 8053729
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTGG
5'SS Class:
major
3'SS Sequence:
CATTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
VRVVSPVLTGGYVLGGGALC
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
60.6
46.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.4
0.64
0.8
70.3
40
Minor 5ss
37.8
-1.4
3.1
40.1
46
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
UBE2Q2
Ensembl Gene ID:
ENSAPLG00000015808
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016525
8034060 - 8057259
23200