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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8053779_8054804_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8053779 - 8054804
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TATGTATTACAT
Flanking Amino Acid:
ALCMELLTKQGWSSAYSIES
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
73.5
30.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
85.6
0.8
0.7
77.5
31.3
Minor 5ss
26.9
-2.7
3
32.5
42.3
Minor BPS
46.3
-0.2
2
67.08
43.3

Associated Gene:

Gene:
UBE2Q2
Ensembl Gene ID:
ENSAPLG00000015808
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016525
8034060 - 8057259
23200