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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8054901_8055560_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8054901 - 8055560
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTTCTCTCATGC
Flanking Amino Acid:
KARVQFGANKNQYNLARAQQ
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
44.4
-0.4
2
56.49
41.8

Associated Gene:

Gene:
UBE2Q2
Ensembl Gene ID:
ENSAPLG00000015808
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016525
8034060 - 8057259
23200