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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8058388_8058518_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8058388 - 8058518
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTGTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTGTAC
U12 Branch Point Sequence:
GCCCCGTGTACG
Flanking Amino Acid:
LPTKALLRAACVCRLWRECA
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
43.7
-0.3
1.4
38.5
41.4
Major PPT
76.5
0.6
0.9
69.4
36.8
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
37.9
-1.1
2.3
38.35
44.1

Associated Gene:

Gene:
FBXO22
Ensembl Gene ID:
ENSAPLG00000028694
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027860
8058284 - 8064144
5861