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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8058652_8058989_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8058652 - 8058989
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CCTCCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAGCAC
U12 Branch Point Sequence:
GGACACAGCACA
Flanking Amino Acid:
LVRALARELEKVHVLPQTVL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
42.9
-0.4
1.3
45.4
37.1
Major PPT
79.1
0.65
0.7
72.8
25.4
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
36.2
-1
2
43.12
36.8

Associated Gene:

Gene:
FBXO22
Ensembl Gene ID:
ENSAPLG00000028694
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027860
8058284 - 8064144
5861