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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8072528_8077248_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8072528 - 8077248
Intron Length:
4721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACGGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTTTCTTACGG
Flanking Amino Acid:
LLIGTFYFLCRKASIPRTSS
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.7
0.44
1.1
70
40.5
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
53.3
-0
2
63.23
44.8

Associated Gene:

Gene:
NRG4
Ensembl Gene ID:
ENSAPLG00000018724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043212
8072434 - 8086596
14163