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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_80750_84206_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80750 - 84206
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATCTG
5'SS Class:
major
3'SS Sequence:
ATTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTTTAGTTAGAT
Flanking Amino Acid:
ISGEETFIISKSSSVFHVMK
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
68.8
42.1
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
81.7
0.71
0.8
73.7
36.2
Minor 5ss
38.9
-1.2
3.1
50
40.6
Minor BPS
48.1
-0
2.4
78.5
43.3

Associated Gene:

Gene:
CYP19A1
Ensembl Gene ID:
ENSAPLG00000007655
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007995
68677 - 93897
25221