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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8077399_8082543_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8077399 - 8082543
Intron Length:
5145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TATGCTCTAATC
Flanking Amino Acid:
MIPTVSSPFCRCIENYTGAR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
29.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
85.3
0.79
0.9
76.9
42.1
Minor 5ss
30.7
-2.2
3.1
40.9
45.4
Minor BPS
56.2
0.17
1.7
67.89
38

Associated Gene:

Gene:
NRG4
Ensembl Gene ID:
ENSAPLG00000018724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043212
8072434 - 8086596
14163