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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8082638_8086586_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8082638 - 8086586
Intron Length:
3949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTCT
5'SS Class:
major
3'SS Sequence:
TCTTATTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGGTCTTATTT
Flanking Amino Acid:
MRTDHEELCGTSY
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73.1
38.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.5
0.62
1
78.9
33
Minor 5ss
44.9
-0.5
3.2
65.7
45.4
Minor BPS
58.4
0.34
1.7
74.68
43.1

Associated Gene:

Gene:
NRG4
Ensembl Gene ID:
ENSAPLG00000018724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043212
8072434 - 8086596
14163