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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8115912_8116981_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8115912 - 8116981
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
GATTTTTAGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82.6
0.73
0.8
77
31.6
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
55
0.24
1.7
71.71
39.6

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016333
8113708 - 8169584
55877