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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8115912_8119307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8115912 - 8119307
Intron Length:
3396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCG
Flanking Amino Acid:
MTLQMMPTIEGSVSE
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.8
0.72
0.9
78.4
39.4
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
61.7
0.23
1.6
67.28
40.8

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042311
8109924 - 8169081
59158
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877