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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8117088_8119307_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8117088 - 8119307
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCG
Flanking Amino Acid:
MTSPQPTIEGSVSE
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.8
0.72
0.9
78.4
39.4
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
61.7
0.23
1.6
67.28
40.8

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016333
8113708 - 8169584
55877