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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8119497_8130497_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8119497 - 8130497
Intron Length:
11001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
SNLDEEYQREGSNWLKPCCG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.8
0.78
0.6
85.1
22.4
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016333
8113708 - 8169584
55877
ENSAPLT00000042311
8109924 - 8169081
59158
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877