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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8135265_8144654_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8135265 - 8144654
Intron Length:
9390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTCCCCTAATC
Flanking Amino Acid:
LVILSVFFSETILRIVVLGI
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
75.6
0.58
0.9
70.4
39.9
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
69.6
0.59
1.6
80.96
33

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016333
8113708 - 8169584
55877
ENSAPLT00000042311
8109924 - 8169081
59158
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877