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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8144712_8146264_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8144712 - 8146264
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTGAAAAAACT
Flanking Amino Acid:
IWDYIENKIEVFDGAVIILS
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78.2
0.63
0.8
70.3
36
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
43.4
-0.4
2.3
71.19
45.1

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877
ENSAPLT00000016333
8113708 - 8169584
55877
ENSAPLT00000042311
8109924 - 8169081
59158