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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8146404_8147704_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8146404 - 8147704
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAACTTTAAGT
Flanking Amino Acid:
RIWRVKRIIDAYVLPVKVEM
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
66.8
0.61
1.7
81.47
40.1

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016333
8113708 - 8169584
55877
ENSAPLT00000042311
8109924 - 8169081
59158
ENSAPLT00000036612
8144794 - 8169081
24288
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877