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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8147821_8158348_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8147821 - 8158348
Intron Length:
10528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAAGTTC
5'SS Class:
major
3'SS Sequence:
TTTATTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTTGTTTTATT
Flanking Amino Acid:
RLTQICQEQGFEIRQLRAHL
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
67.2
39.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89
0.88
0.7
81.3
36.2
Minor 5ss
40.2
-1.1
3.4
49.9
46.8
Minor BPS
53.3
0.18
2
76.14
40.9

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036612
8144794 - 8169081
24288
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877
ENSAPLT00000016333
8113708 - 8169584
55877
ENSAPLT00000042311
8109924 - 8169081
59158