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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8166497_8168488_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8166497 - 8168488
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTACATTTACCC
Flanking Amino Acid:
ISRYYNEPSSDSAIPEAAVC
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
75.8
0.58
0.8
69.4
30.6
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
51.5
0.03
1.8
65.7
39.6

Associated Gene:

Gene:
TMEM266
Ensembl Gene ID:
ENSAPLG00000015663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016343
8109924 - 8169081
59158
ENSAPLT00000016339
8113708 - 8169584
55877
ENSAPLT00000016333
8113708 - 8169584
55877
ENSAPLT00000042311
8109924 - 8169081
59158
ENSAPLT00000036612
8144794 - 8169081
24288