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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8170942_8174935_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8170942 - 8174935
Intron Length:
3994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATCACTATAAAT
Flanking Amino Acid:
QHLAGMKDSKTIVAINKDPE
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
78.3
30.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
40.5
-1.1
2.7
50.4
46.1
Minor BPS
50.5
0.09
1.7
69.46
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016228
8169917 - 8195165
25249