Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8175002_8186679_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8175002 - 8186679

Intron Length:

11678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

TGTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

GGTACCAAAAAT

Flanking Amino Acid:

VGQTGKIVAPELYIAVGISG

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

75.9

39.9

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

84.8

0.78

0.7

77.9

36.6

Minor 5ss

41.5

-0.9

2.8

57.1

41.1

Minor BPS

45.9

-0.2

65.2

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015531

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016228

8169917 - 8195165

25249