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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8186763_8187790_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8186763 - 8187790
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTCAACT
Flanking Amino Acid:
YDLADQLHAAVGASRAAVDA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.1
40.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72
0.49
0.9
67.7
38
Minor 5ss
46.8
-0.3
2.9
64.1
47.4
Minor BPS
67.9
0.64
1.5
85.3
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026558
8174936 - 8195165
20230
ENSAPLT00000016228
8169917 - 8195165
25249
ENSAPLT00000043898
8183495 - 8195165
11671