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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8190125_8191292_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8190125 - 8191292
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
TCTTCTGTAAAA
Flanking Amino Acid:
PDTFVRTIYAGNVICTVQCD
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
56.6
0.2
2.1
71.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043898
8183495 - 8195165
11671
ENSAPLT00000026558
8174936 - 8195165
20230
ENSAPLT00000016228
8169917 - 8195165
25249