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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8191393_8193020_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8191393 - 8193020
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTAACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCATCTCTAACT
Flanking Amino Acid:
ICAGASAFGKNLIPRVAAKL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.6
0.53
0.8
70.3
35
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
66.9
0.61
1.7
81.43
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043898
8183495 - 8195165
11671
ENSAPLT00000026558
8174936 - 8195165
20230
ENSAPLT00000016228
8169917 - 8195165
25249