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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8193104_8193203_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8193104 - 8193203
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCAGCAATA
Flanking Amino Acid:
QHDVYKGFLAEELTPLVLAT
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.5
0.75
0.8
81.6
34.6
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
48.6
-0.1
2.4
72.85
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043898
8183495 - 8195165
11671
ENSAPLT00000026558
8174936 - 8195165
20230
ENSAPLT00000016228
8169917 - 8195165
25249