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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8193286_8194976_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8193286 - 8194976
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTTTGTAACC
Flanking Amino Acid:
CLVAGTSCDKVAQELSKVQG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
73.7
0.53
0.9
67.6
37.9
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
59.2
0.27
2
73.03
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043898
8183495 - 8195165
11671
ENSAPLT00000026558
8174936 - 8195165
20230
ENSAPLT00000016228
8169917 - 8195165
25249