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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8206155_8208798_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8206155 - 8208798
Intron Length:
2644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTATG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
SCVLLATFIQDFAQSSGQMD
Intron Amino Acid Position:
1267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.7
44.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
43.5
-0.7
3
59.2
45.4
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628